44 complex(es)
PDB ID
Protein Name
Organism
Uniprot ID/ACC
Ligand Name
HET ID
Structure
PS-Score (Pocket Similarity)
Card
1 5NV2 DNA (cytosine-5)-methyltransferase 3B Homo sapiens Q9UBC3 (DNM3B_HUMAN) (2~{S})-6-methyl-~{N}-propan-2-yl-heptan-2-amine 9AE 0.9 SHOW
2 5CIU DNA (cytosine-5)-methyltransferase 3B Homo sapiens Q9UBC3 (DNM3B_HUMAN) N-TRIMETHYLLYSINE M3L 0.86 SHOW
3 3QKJ DNA (cytosine-5)-methyltransferase 3B Homo sapiens Q9UBC3 (DNM3B_HUMAN) 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL BTB 0.85 SHOW
4 5NR3 DNA (cytosine-5)-methyltransferase 3B Homo sapiens Q9UBC3 (DNM3B_HUMAN) Ethambutol 95E 0.85 SHOW
5 5NVO DNA (cytosine-5)-methyltransferase 3B Homo sapiens Q9UBC3 (DNM3B_HUMAN) CHOLINE ION CHT 0.76 SHOW
6 5NRS DNA (cytosine-5)-methyltransferase 3B Homo sapiens Q9UBC3 (DNM3B_HUMAN) (2~{S})-1-[2-hydroxyethyl-[(2~{S})-2-oxidanylpropyl]amino]propan-2-ol 962 0.74 SHOW
7 5NV7 DNA (cytosine-5)-methyltransferase 3B Homo sapiens Q9UBC3 (DNM3B_HUMAN) N1-(2-hydroxyethyl)-2-methyl-1,2-propanediamine 9AK 0.72 SHOW
8 4N4H Zinc finger MYND domain-containing protein 11 Mus musculus Q8R5C8 (ZMY11_MOUSE) N-TRIMETHYLLYSINE M3L 0.7 SHOW
9 5NRR DNA (cytosine-5)-methyltransferase 3B Homo sapiens Q9UBC3 (DNM3B_HUMAN) 5-[2-hydroxyethyl(propyl)amino]pentan-1-ol 96E 0.7 SHOW
10 6KCU JIL-1 anchoring and stabilizing protein, isoform A Drosophila melanogaster Q9VAA9 (Q9VAA9_DROME) 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL BTB 0.68 SHOW
11 3QJ6 Hepatoma-derived growth factor-related protein 2 Homo sapiens Q7Z4V5 (HDGR2_HUMAN) N-TRIMETHYLLYSINE M3L 0.67 SHOW
12 5NV0 DNA (cytosine-5)-methyltransferase 3B Homo sapiens Q9UBC3 (DNM3B_HUMAN) 4-(dipropylamino)butanenitrile 9AH 0.65 SHOW
13 6G2E Histone-lysine N-methyltransferase NSD3 Homo sapiens Q9BZ95 (NSD3_HUMAN) [3,5-dimethyl-4-(1-methyl-5-pyridin-4-yl-imidazol-4-yl)phenyl]methanamine EHH 0.64 SHOW
14 6G29 Histone-lysine N-methyltransferase NSD3 Homo sapiens Q9BZ95 (NSD3_HUMAN) 5-methyl-2-piperidin-4-yl-6-pyridin-4-yl-pyridazin-3-one EHK 0.63 SHOW
15 6G2C Histone-lysine N-methyltransferase NSD3 Homo sapiens Q9BZ95 (NSD3_HUMAN) 3,5-dimethyl-4-(1-methyl-5-pyridin-4-yl-imidazol-4-yl)-1,2-oxazole EHT 0.63 SHOW
16 2X4Y Peregrin Homo sapiens P55201 (BRPF1_HUMAN) N-TRIMETHYLLYSINE M3L 0.62 SHOW
17 3MO8 Peregrin Homo sapiens P55201 (BRPF1_HUMAN) N-TRIMETHYLLYSINE M3L 0.62 SHOW
18 2X4W Peregrin Homo sapiens P55201 (BRPF1_HUMAN) N-TRIMETHYLLYSINE M3L 0.61 SHOW
19 6G2B Histone-lysine N-methyltransferase NSD3 Homo sapiens Q9BZ95 (NSD3_HUMAN) 4-(3-methyl-5-phenyl-imidazol-4-yl)pyridine EH8 0.6 SHOW
20 6BHD Histone-lysine N-methyltransferase SETDB1 Homo sapiens Q15047 (SETB1_HUMAN) N-DIMETHYL-LYSINE MLY 0.6 SHOW
21 6G27 Histone-lysine N-methyltransferase NSD3 Homo sapiens Q9BZ95 (NSD3_HUMAN) 5-methyl-6-phenyl-2-piperidin-4-yl-pyridazin-3-one EHE 0.6 SHOW
22 3QBY Hepatoma-derived growth factor-related protein 2 Homo sapiens Q7Z4V5 (HDGR2_HUMAN) N-TRIMETHYLLYSINE M3L 0.59 SHOW
23 6G2O Histone-lysine N-methyltransferase NSD3 Homo sapiens Q9BZ95 (NSD3_HUMAN) [4-[5-(7-fluoranylquinolin-4-yl)-1-methyl-imidazol-4-yl]-3,5-dimethyl-phenyl]methanamine EJE 0.58 SHOW
24 6G25 Histone-lysine N-methyltransferase NSD3 Homo sapiens Q9BZ95 (NSD3_HUMAN) 3,5-dimethyl-4-(4-pyridin-4-yl-1~{H}-pyrazol-3-yl)-1,2-oxazole EHQ 0.57 SHOW
25 6G2F Histone-lysine N-methyltransferase NSD3 Homo sapiens Q9BZ95 (NSD3_HUMAN) 4-[5-(7-fluoranylquinolin-4-yl)-1-methyl-imidazol-4-yl]-3,5-dimethyl-1,2-oxazole EHW 0.57 SHOW
26 6R3E DNA (cytosine-5)-methyltransferase 3B Homo sapiens Q9UBC3 (DNM3B_HUMAN) Triisopropanolamine 96H 0.53 SHOW
27 6IIT Hepatoma-derived growth factor-related protein 3 Homo sapiens Q9Y3E1 (HDGR3_HUMAN) N-DIMETHYL-LYSINE MLY 0.52 SHOW
28 6BHE Histone-lysine N-methyltransferase SETDB1 Homo sapiens Q15047 (SETB1_HUMAN) N-TRIMETHYLLYSINE M3L 0.52 SHOW
29 2X4X Peregrin Homo sapiens P55201 (BRPF1_HUMAN) N-TRIMETHYLLYSINE M3L 0.51 SHOW
30 6IIS Hepatoma-derived growth factor-related protein 3 Homo sapiens Q9Y3E1 (HDGR3_HUMAN) N-TRIMETHYLLYSINE M3L 0.51 SHOW
31 4N4I Zinc finger MYND domain-containing protein 11 Mus musculus Q8R5C8 (ZMY11_MOUSE) N-TRIMETHYLLYSINE M3L 0.51 SHOW
32 5VAR Lysine-specific demethylase 4A Homo sapiens O75164 (KDM4A_HUMAN) (1R,2S,3R,4S)-3-[(dimethylamino)methyl]-1-phenylbicyclo[2.2.1]heptan-2-ol 92Y 0.5 SHOW
33 5XFQ PHD finger protein 1 Mus musculus Q9Z1B8 (PHF1_MOUSE) N-TRIMETHYLLYSINE M3L 0.49 SHOW
34 6WAU PHD finger protein 19 Homo sapiens Q5T6S3 (PHF19_HUMAN) N-TRIMETHYLLYSINE M3L 0.48 SHOW
35 5C6S Peregrin Homo sapiens P55201 (BRPF1_HUMAN) isoquinoline-3-carboxylic acid 4K8 0.46 SHOW
36 4BD3 PHD finger protein 19 Homo sapiens Q5T6S3 (PHF19_HUMAN) N-TRIMETHYLLYSINE M3L 0.44 SHOW
37 2GFA Lysine-specific demethylase 4A Homo sapiens O75164 (KDM4A_HUMAN) N-TRIMETHYLLYSINE M3L 0.42 SHOW
38 6WAV PHD finger protein 19 Homo sapiens Q5T6S3 (PHF19_HUMAN) N-TRIMETHYLLYSINE M3L 0.42 SHOW
39 4HCZ PHD finger protein 1 Homo sapiens O43189 (PHF1_HUMAN) N-TRIMETHYLLYSINE M3L 0.42 SHOW
40 6BPI Histone-lysine N-methyltransferase SETDB1 Homo sapiens Q15047 (SETB1_HUMAN) N-DIMETHYL-LYSINE MLY 0.41 SHOW
41 5D6Y Lysine-specific demethylase 4A Homo sapiens O75164 (KDM4A_HUMAN) N-TRIMETHYLLYSINE M3L 0.41 SHOW
42 6IE4 Protein AGENET DOMAIN (AGD)-CONTAINING P1 Arabidopsis thaliana Q500V5 (AGDP1_ARATH) N-METHYL-LYSINE MLZ 0.41 SHOW
43 6ETE Lysine-specific demethylase 4D Homo sapiens Q6B0I6 (KDM4D_HUMAN) [2-(1-methyl-1,2,3,4-tetrazol-4-ium-5-yl)ethanoylamino]azanium BWK 0.41 SHOW
44 6WAT PHD finger protein 1 Homo sapiens O43189 (PHF1_HUMAN) N-TRIMETHYLLYSINE M3L 0.41 SHOW