PDB Entry (5nv7) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5nv7 | Resolution: 2.57 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: DNA (cytosine-5)-methyltransferase 3B | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9UBC3 (DNM3B_HUMAN) | Organism: Homo sapiens |
Gene Symbol: DNMT3B | Gene ID: 1789 |
Pocket Descriptors | |
Volume: 231.424 | Depth: 13.9083 |
Hydrophobicity: 0.757143 | Drug Score: 0.380684 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: N1-(2-hydroxyethyl)-2-methyl-1,2-propanediamine | ||
HET ID: 9AK | PubChem: 226840 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: OCCNCC(N)(C)C | ||
Standard InChI: InChI=1S/C6H16N2O/c1-6(2,7)5-8-3-4-9/h8-9H,3-5,7H2,1-2H3 | ||
Molecular Formula: C6H16N2O | Mol. Weight: 132.20404 | Heavy Atoms: 9 |
Charge: 0 | Is Chiral: False | logP: 0.3968 |
HBD: 3 | HBA: 3 | TPSA: 58.28 |
#Bonds: 8 | #Rotatable Bonds: 4 | Shape Complexity: 1.0 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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