PDB Entry (5nv7)

Download

Visualizer: MichelaNGLo

PDB ID: 5nv7 Resolution: 2.57 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: DNA (cytosine-5)-methyltransferase 3B
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9UBC3 (DNM3B_HUMAN) Organism: Homo sapiens
Gene Symbol: DNMT3B Gene ID: 1789
Pocket Descriptors
Volume: 231.424 Depth: 13.9083
Hydrophobicity: 0.757143 Drug Score: 0.380684
Pocket Similarity: Calculate
Ligand
Ligand Name:   N1-(2-hydroxyethyl)-2-methyl-1,2-propanediamine
HET ID:   9AK PubChem:   226840
DrugBank:   - ChEMBL:   -
Canonical SMILES:   OCCNCC(N)(C)C
Standard InChI:   InChI=1S/C6H16N2O/c1-6(2,7)5-8-3-4-9/h8-9H,3-5,7H2,1-2H3
Molecular Formula:   C6H16N2O Mol. Weight:   132.20404 Heavy Atoms:   9
Charge:   0 Is Chiral:   False logP:   0.3968
HBD:   3 HBA:   3 TPSA:   58.28
#Bonds:   8 #Rotatable Bonds:   4 Shape Complexity:   1.0
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-