PDB Entry (5nv0)

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Visualizer: MichelaNGLo

PDB ID: 5nv0 Resolution: 2.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: DNA (cytosine-5)-methyltransferase 3B
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9UBC3 (DNM3B_HUMAN) Organism: Homo sapiens
Gene Symbol: DNMT3B Gene ID: 1789
Pocket Descriptors
Volume: 189.376 Depth: 10.6883
Hydrophobicity: 0.75 Drug Score: 0.361067
Pocket Similarity: Calculate
Ligand
Ligand Name:   4-(dipropylamino)butanenitrile
HET ID:   9AH PubChem:   98747
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CCCN(CCCC#N)CCC
Standard InChI:   InChI=1S/C10H20N2/c1-3-8-12(9-4-2)10-6-5-7-11/h3-6,8-10H2,1-2H3
Molecular Formula:   C10H20N2 Mol. Weight:   168.2792 Heavy Atoms:   12
Charge:   0 Is Chiral:   False logP:   2.41218
HBD:   0 HBA:   2 TPSA:   27.03
#Bonds:   11 #Rotatable Bonds:   7 Shape Complexity:   1.0
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-