PDB Entry (5nv0) Download |
||
Visualizer: MichelaNGLo |
||
PDB ID: 5nv0 | Resolution: 2.4 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
|
Protein Name: DNA (cytosine-5)-methyltransferase 3B | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9UBC3 (DNM3B_HUMAN) | Organism: Homo sapiens |
Gene Symbol: DNMT3B | Gene ID: 1789 |
Pocket Descriptors | |
Volume: 189.376 | Depth: 10.6883 |
Hydrophobicity: 0.75 | Drug Score: 0.361067 |
Pocket Similarity: Calculate |
Ligand |
||
Ligand Name: 4-(dipropylamino)butanenitrile | ||
HET ID: 9AH | PubChem: 98747 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: CCCN(CCCC#N)CCC | ||
Standard InChI: InChI=1S/C10H20N2/c1-3-8-12(9-4-2)10-6-5-7-11/h3-6,8-10H2,1-2H3 | ||
Molecular Formula: C10H20N2 | Mol. Weight: 168.2792 | Heavy Atoms: 12 |
Charge: 0 | Is Chiral: False | logP: 2.41218 |
HBD: 0 | HBA: 2 | TPSA: 27.03 |
#Bonds: 11 | #Rotatable Bonds: 7 | Shape Complexity: 1.0 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
||
- |