PDB Entry (5nr3) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5nr3 | Resolution: 2.3 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: DNA (cytosine-5)-methyltransferase 3B | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9UBC3 (DNM3B_HUMAN) | Organism: Homo sapiens |
Gene Symbol: DNMT3B | Gene ID: 1789 |
Pocket Descriptors | |
Volume: 201.088 | Depth: 11.5447 |
Hydrophobicity: 0.823529 | Drug Score: 0.390624 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: Ethambutol | ||
HET ID: 95E | PubChem: 14052 | |
DrugBank: DB00330 | ChEMBL: CHEMBL44884 | |
Canonical SMILES: CC[C@H](NCCN[C@H](CO)CC)CO | ||
Standard InChI: InChI=1S/C10H24N2O2/c1-3-9(7-13)11-5-6-12-10(4-2)8-14/h9-14H,3-8H2,1-2H3/t9-,10-/m0/s1 | ||
Molecular Formula: C10H24N2O2 | Mol. Weight: 204.30975 | Heavy Atoms: 14 |
Charge: 0 | Is Chiral: True | logP: 0.4892 |
HBD: 4 | HBA: 4 | TPSA: 64.52 |
#Bonds: 15 | #Rotatable Bonds: 9 | Shape Complexity: 1.0 |
Stereocomplexity: 0.2 | Ligand Type: Small Molecule |
Binding Affinity |
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