PDB Entry (5nr3)

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Visualizer: MichelaNGLo

PDB ID: 5nr3 Resolution: 2.3 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: DNA (cytosine-5)-methyltransferase 3B
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9UBC3 (DNM3B_HUMAN) Organism: Homo sapiens
Gene Symbol: DNMT3B Gene ID: 1789
Pocket Descriptors
Volume: 201.088 Depth: 11.5447
Hydrophobicity: 0.823529 Drug Score: 0.390624
Pocket Similarity: Calculate
Ligand
Ligand Name:   Ethambutol
HET ID:   95E PubChem:   14052
DrugBank:   DB00330 ChEMBL:   CHEMBL44884
Canonical SMILES:   CC[C@H](NCCN[C@H](CO)CC)CO
Standard InChI:   InChI=1S/C10H24N2O2/c1-3-9(7-13)11-5-6-12-10(4-2)8-14/h9-14H,3-8H2,1-2H3/t9-,10-/m0/s1
Molecular Formula:   C10H24N2O2 Mol. Weight:   204.30975 Heavy Atoms:   14
Charge:   0 Is Chiral:   True logP:   0.4892
HBD:   4 HBA:   4 TPSA:   64.52
#Bonds:   15 #Rotatable Bonds:   9 Shape Complexity:   1.0
Stereocomplexity:   0.2 Ligand Type:   Small Molecule
Binding Affinity
-