PDB Entry (5nrr) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5nrr | Resolution: 1.7 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: DNA (cytosine-5)-methyltransferase 3B | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9UBC3 (DNM3B_HUMAN) | Organism: Homo sapiens |
Gene Symbol: DNMT3B | Gene ID: 1789 |
Pocket Descriptors | |
Volume: 257.664 | Depth: 14.3722 |
Hydrophobicity: 0.763158 | Drug Score: 0.418879 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 5-[2-hydroxyethyl(propyl)amino]pentan-1-ol | ||
HET ID: 96E | PubChem: 3264478 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: OCCCCCN(CCO)CCC | ||
Standard InChI: InChI=1S/C10H23NO2/c1-2-6-11(8-10-13)7-4-3-5-9-12/h12-13H,2-10H2,1H3 | ||
Molecular Formula: C10H23NO2 | Mol. Weight: 189.29512 | Heavy Atoms: 13 |
Charge: 0 | Is Chiral: False | logP: 0.8533 |
HBD: 2 | HBA: 3 | TPSA: 43.7 |
#Bonds: 12 | #Rotatable Bonds: 9 | Shape Complexity: 1.0 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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