PDB Entry (5nrr)

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Visualizer: MichelaNGLo

PDB ID: 5nrr Resolution: 1.7 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: DNA (cytosine-5)-methyltransferase 3B
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9UBC3 (DNM3B_HUMAN) Organism: Homo sapiens
Gene Symbol: DNMT3B Gene ID: 1789
Pocket Descriptors
Volume: 257.664 Depth: 14.3722
Hydrophobicity: 0.763158 Drug Score: 0.418879
Pocket Similarity: Calculate
Ligand
Ligand Name:   5-[2-hydroxyethyl(propyl)amino]pentan-1-ol
HET ID:   96E PubChem:   3264478
DrugBank:   - ChEMBL:   -
Canonical SMILES:   OCCCCCN(CCO)CCC
Standard InChI:   InChI=1S/C10H23NO2/c1-2-6-11(8-10-13)7-4-3-5-9-12/h12-13H,2-10H2,1H3
Molecular Formula:   C10H23NO2 Mol. Weight:   189.29512 Heavy Atoms:   13
Charge:   0 Is Chiral:   False logP:   0.8533
HBD:   2 HBA:   3 TPSA:   43.7
#Bonds:   12 #Rotatable Bonds:   9 Shape Complexity:   1.0
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-