PDB Entry (5nvo) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5nvo | Resolution: 2.4 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: DNA (cytosine-5)-methyltransferase 3B | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9UBC3 (DNM3B_HUMAN) | Organism: Homo sapiens |
Gene Symbol: DNMT3B | Gene ID: 1789 |
Pocket Descriptors | |
Volume: 206.592 | Depth: 10.6283 |
Hydrophobicity: 0.735849 | Drug Score: 0.143297 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: CHOLINE ION | ||
HET ID: CHT | PubChem: 305 | |
DrugBank: DB00122 | ChEMBL: CHEMBL920 | |
Canonical SMILES: OCC[N+](C)(C)C | ||
Standard InChI: InChI=1S/C5H14NO/c1-6(2,3)4-5-7/h7H,4-5H2,1-3H3/q+1 | ||
Molecular Formula: C5H14NO+ | Mol. Weight: 104.17076 | Heavy Atoms: 7 |
Charge: 1 | Is Chiral: False | logP: -0.3151 |
HBD: 1 | HBA: 1 | TPSA: 20.23 |
#Bonds: 6 | #Rotatable Bonds: 2 | Shape Complexity: 1.0 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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