PDB Entry (3qkj)

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Visualizer: MichelaNGLo

PDB ID: 3qkj Resolution: 2.04 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21720545 DOI: 10.1371/journal.pone.0018919
Protein
Protein Name: DNA (cytosine-5)-methyltransferase 3B
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9UBC3 (DNM3B_HUMAN) Organism: Homo sapiens
Gene Symbol: DNMT3B Gene ID: 1789
Pocket Descriptors
Volume: 84.288 Depth: 10.5594
Hydrophobicity: 0.781818 Drug Score: 0.275119
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
HET ID:   BTB PubChem:   81462
DrugBank:   DB02748 ChEMBL:   CHEMBL1229649
Canonical SMILES:   OCCN(C(CO)(CO)CO)CCO
Standard InChI:   InChI=1S/C8H19NO5/c10-3-1-9(2-4-11)8(5-12,6-13)7-14/h10-14H,1-7H2
Molecular Formula:   C8H19NO5 Mol. Weight:   209.24016 Heavy Atoms:   14
Charge:   0 Is Chiral:   False logP:   -3.0113
HBD:   5 HBA:   6 TPSA:   104.39
#Bonds:   13 #Rotatable Bonds:   8 Shape Complexity:   1.0
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
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