PDB Entry (3qkj) Download |
||
Visualizer: MichelaNGLo |
||
PDB ID: 3qkj | Resolution: 2.04 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 21720545 | DOI: 10.1371/journal.pone.0018919 | |
Protein |
|
Protein Name: DNA (cytosine-5)-methyltransferase 3B | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9UBC3 (DNM3B_HUMAN) | Organism: Homo sapiens |
Gene Symbol: DNMT3B | Gene ID: 1789 |
Pocket Descriptors | |
Volume: 84.288 | Depth: 10.5594 |
Hydrophobicity: 0.781818 | Drug Score: 0.275119 |
Pocket Similarity: Calculate |
Ligand |
||
Ligand Name: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | ||
HET ID: BTB | PubChem: 81462 | |
DrugBank: DB02748 | ChEMBL: CHEMBL1229649 | |
Canonical SMILES: OCCN(C(CO)(CO)CO)CCO | ||
Standard InChI: InChI=1S/C8H19NO5/c10-3-1-9(2-4-11)8(5-12,6-13)7-14/h10-14H,1-7H2 | ||
Molecular Formula: C8H19NO5 | Mol. Weight: 209.24016 | Heavy Atoms: 14 |
Charge: 0 | Is Chiral: False | logP: -3.0113 |
HBD: 5 | HBA: 6 | TPSA: 104.39 |
#Bonds: 13 | #Rotatable Bonds: 8 | Shape Complexity: 1.0 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
||
- |