PDB Entry (5nv2)

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Visualizer: MichelaNGLo

PDB ID: 5nv2 Resolution: 2.03 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: DNA (cytosine-5)-methyltransferase 3B
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9UBC3 (DNM3B_HUMAN) Organism: Homo sapiens
Gene Symbol: DNMT3B Gene ID: 1789
Pocket Descriptors
Volume: 211.136 Depth: 12.0599
Hydrophobicity: 0.777778 Drug Score: 0.234723
Pocket Similarity: Calculate
Ligand
Ligand Name:   (2~{S})-6-methyl-~{N}-propan-2-yl-heptan-2-amine
HET ID:   9AE PubChem:   38988589
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CC(CCC[C@@H](NC(C)C)C)C
Standard InChI:   InChI=1S/C11H25N/c1-9(2)7-6-8-11(5)12-10(3)4/h9-12H,6-8H2,1-5H3/t11-/m0/s1
Molecular Formula:   C11H25N Mol. Weight:   171.3229 Heavy Atoms:   12
Charge:   0 Is Chiral:   True logP:   3.5901
HBD:   1 HBA:   1 TPSA:   12.03
#Bonds:   12 #Rotatable Bonds:   6 Shape Complexity:   1.0
Stereocomplexity:   0.09090909 Ligand Type:   Small Molecule
Binding Affinity
-