PDB Entry (5nv2) Download |
||
Visualizer: MichelaNGLo |
||
PDB ID: 5nv2 | Resolution: 2.03 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
|
Protein Name: DNA (cytosine-5)-methyltransferase 3B | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9UBC3 (DNM3B_HUMAN) | Organism: Homo sapiens |
Gene Symbol: DNMT3B | Gene ID: 1789 |
Pocket Descriptors | |
Volume: 211.136 | Depth: 12.0599 |
Hydrophobicity: 0.777778 | Drug Score: 0.234723 |
Pocket Similarity: Calculate |
Ligand |
||
Ligand Name: (2~{S})-6-methyl-~{N}-propan-2-yl-heptan-2-amine | ||
HET ID: 9AE | PubChem: 38988589 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: CC(CCC[C@@H](NC(C)C)C)C | ||
Standard InChI: InChI=1S/C11H25N/c1-9(2)7-6-8-11(5)12-10(3)4/h9-12H,6-8H2,1-5H3/t11-/m0/s1 | ||
Molecular Formula: C11H25N | Mol. Weight: 171.3229 | Heavy Atoms: 12 |
Charge: 0 | Is Chiral: True | logP: 3.5901 |
HBD: 1 | HBA: 1 | TPSA: 12.03 |
#Bonds: 12 | #Rotatable Bonds: 6 | Shape Complexity: 1.0 |
Stereocomplexity: 0.09090909 | Ligand Type: Small Molecule |
Binding Affinity |
||
- |