PDB Entry (6g2e) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6g2e | Resolution: 1.85 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31285596 | DOI: 10.1038/s41589-019-0310-x | |
Protein |
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Protein Name: Histone-lysine N-methyltransferase NSD3 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9BZ95 (NSD3_HUMAN) | Organism: Homo sapiens |
Gene Symbol: NSD3 | Gene ID: 54904 |
Pocket Descriptors | |
Volume: 300.096 | Depth: 9.97597 |
Hydrophobicity: 0.714286 | Drug Score: 0.407096 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: [3,5-dimethyl-4-(1-methyl-5-pyridin-4-yl-imidazol-4-yl)phenyl]methanamine | ||
HET ID: EHH | PubChem: 138115332 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: NCc1cc(C)c(c(c1)C)c1ncn(c1c1ccncc1)C | ||
Standard InChI: InChI=1S/C18H20N4/c1-12-8-14(10-19)9-13(2)16(12)17-18(22(3)11-21-17)15-4-6-20-7-5-15/h4-9,11H,10,19H2,1-3H3 | ||
Molecular Formula: C18H20N4 | Mol. Weight: 292.3782 | Heavy Atoms: 22 |
Charge: 0 | Is Chiral: False | logP: 3.9249 |
HBD: 1 | HBA: 4 | TPSA: 56.73 |
#Bonds: 24 | #Rotatable Bonds: 3 | Shape Complexity: 0.22222222 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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