PDB Entry (5var) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5var | Resolution: 1.83 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 29691138 | DOI: 10.1016/j.bmcl.2018.04.050 | |
Protein |
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Protein Name: Lysine-specific demethylase 4A | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: O75164 (KDM4A_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4A | Gene ID: 9682 |
Pocket Descriptors | |
Volume: 179.456 | Depth: 12.0665 |
Hydrophobicity: 0.740741 | Drug Score: 0.259365 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (1R,2S,3R,4S)-3-[(dimethylamino)methyl]-1-phenylbicyclo[2.2.1]heptan-2-ol | ||
HET ID: 92Y | PubChem: 132472249 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: CN(C[C@H]1[C@H]2CC[C@@]([C@H]1O)(C2)c1ccccc1)C | ||
Standard InChI: InChI=1S/C16H23NO/c1-17(2)11-14-12-8-9-16(10-12,15(14)18)13-6-4-3-5-7-13/h3-7,12,14-15,18H,8-11H2,1-2H3/t12-,14-,15-,16+/m0/s1 | ||
Molecular Formula: C16H23NO | Mol. Weight: 245.35992 | Heavy Atoms: 18 |
Charge: 0 | Is Chiral: True | logP: 2.2768 |
HBD: 1 | HBA: 2 | TPSA: 23.47 |
#Bonds: 23 | #Rotatable Bonds: 3 | Shape Complexity: 0.625 |
Stereocomplexity: 0.25 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | Kd : 81700 nM |