PDB Entry (3qj6)

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Visualizer: MichelaNGLo

PDB ID: 3qj6 Resolution: 2.3 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21720545 DOI: 10.1371/journal.pone.0018919
Protein
Protein Name: Hepatoma-derived growth factor-related protein 2
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q7Z4V5 (HDGR2_HUMAN) Organism: Homo sapiens
Gene Symbol: HDGFL2 Gene ID: 84717
Pocket Descriptors
Volume: 284.928 Depth: 13.5882
Hydrophobicity: 0.736842 Drug Score: 0.180811
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-TRIMETHYLLYSINE
HET ID:   M3L PubChem:   440121, 6992003
DrugBank:   DB03977 ChEMBL:   CHEMBL1234168
Canonical SMILES:   OC(=O)[C@H](CCCC[N+](C)(C)C)N
Standard InChI:   InChI=1S/C9H20N2O2/c1-11(2,3)7-5-4-6-8(10)9(12)13/h8H,4-7,10H2,1-3H3/p+1/t8-/m0/s1
Molecular Formula:   C9H21N2O2+ Mol. Weight:   189.27524 Heavy Atoms:   13
Charge:   1 Is Chiral:   True logP:   0.9751
HBD:   2 HBA:   3 TPSA:   63.32
#Bonds:   13 #Rotatable Bonds:   6 Shape Complexity:   0.8888889
Stereocomplexity:   0.11111111 Ligand Type:   H3K79me3
Binding Affinity
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