Protein
Protein Name Prothrombin
#PDB ID 30
Organism Homo sapiens (Human)
Uniprot ID/ACC P00734 (THRB_HUMAN)
Synonym(s)
  •   prepro-coagulation factor II
  • prothrombin B-chain
  • thrombin factor II
  • PT
  • RPRGL2
  • THPH1
show 5 synonym(s)
Gene Symbol F2
Gene ID 2147
Sequence MAHVRGLQLPGCLALAALCSLVHSQHVFLAPQQARSLLQRVRRANTFLEEVRKGNLERECVEETCSYEEAFEALESSTATDVFWAKYTACETARTPRDKLAACLEGNCAEGLGTNYRGHVNITRSGIECQLWRSRYPHKPEINSTTHPGADLQENFCRNPDSSTTGPWCYTTDPTVRRQECSIPVCGQDQVTVAMTPRSEGSSVNLSPPLEQCVPDRGQQYQGRLAVTTHGLPCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGRTATSEYQTFFNPRTFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE
Protein Class HYDROLASE
Function Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing.
Bound Ligands
Ligand ID HET Code PDB ID Binding Affinity Binding Database Structure Complex Card
COVPDB55 110 1G37 IC50 : 0.1 nM PDBBind SHOW
COVPDB1 00K 1A46 Ki : 2000 nM PDBBind SHOW
COVPDB2 00L 1A5G Ki : 0.071 nM PDBBind SHOW
COVPDB3 00N 1A61 Ki : 2.4 nM PDBBind SHOW
COVPDB4 00Q 1TBZ Ki : 0.16 nM PDBBind SHOW
COVPDB51 0ZE 1B5G Ki : 10 nM PDBBind SHOW
COVPDB60 157 1QHR IC50 : 130 nM PDBBind SHOW
COVPDB64 166 1QJ1 IC50 : 9 nM PDBBind SHOW
COVPDB65 167 1QJ6 IC50 : 18 nM PDBBind SHOW
COVPDB99 1Z0 1DOJ Ki : 1.1 nM PDBBind SHOW
COVPDB237 4ND 1NO9 Ki : 24 nM PDBBind SHOW
COVPDB501 APA 1AHT Ki : 620 nM PDBBind SHOW
COVPDB697 DI2 1LHD Ki : 0.24 nM, Ki : 200 nM BindingDB SHOW
COVPDB698 DI3 1LHE Ki : 0.29 nM PDBBind SHOW
COVPDB699 DI4 1LHF Ki : 8.1 nM PDBBind SHOW
COVPDB700 DI5 1LHG Ki : 79 nM PDBBind SHOW
COVPDB710 DP7 1LHC Ki : 41 nM, Ki : 0.04 nM, Ki : 55 nM BindingDB SHOW
COVPDB874 GR1 1QJ7 IC50 : 8 nM PDBBind SHOW
COVPDB875 GR4 1AWF Ki : 970 nM PDBBind SHOW
COVPDB1090 MDL 1AD8 Ki : 250 nM PDBBind SHOW
COVPDB17 0G6 6PX5
-
-
SHOW
COVPDB950 IN2 1UMA
-
-
SHOW
COVPDB1333 T29 1A3B
-
-
SHOW
COVPDB17 0G6 4CH8
-
-
SHOW
COVPDB1341 T42 1AI8
-
-
SHOW
COVPDB689 DFK 3E6P
-
-
SHOW
COVPDB1330 T16 1A3E
-
-
SHOW
COVPDB1223 PHV 1H8I
-
-
SHOW
COVPDB102 1ZV 1AY6
-
-
SHOW
COVPDB18 0GJ 1DX5
-
-
SHOW