PDB Entry (1no9) |
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PDB ID: 1no9 | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 12885234 | DOI: 10.1021/bi020512l | |
Protein |
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Protein Name: Prothrombin | |
Uniprot ID/ACC: P00734 (THRB_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: F2 | Gene ID: 2147 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: N4-(N,N-DIPHENYLCARBAMOYL)-AMINOGUANIDINE | ||
Canonical SMILES: c1ccccc1N(C(=O)NN=C(N)N)c2ccccc2 | ||
Standard InChI: InChI=1S/C14H15N5O/c15-13(16)17-18-14(20)19(11-7-3-1-4-8-11)12-9-5-2-6-10-12/h1-10H,(H,18,20)(H4,15,16,17) | ||
HET Code: 4ND | PubChem: 4073054 | |
DrugBank: DB07120 | ChEMBL: CHEMBL1230310 | |
Molecular Formula: C14H15N5O | Mol. Weight: 269.12766 | logP: 1.7227 |
HBD: 3 | HBA: 2 | |
#Rotatable Bonds: 3 | TPSA: 96.74 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Acyl Substitution | SER 195 | H | 17.52 | - | Hydrazide |
Binding Affinity |
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Database Name | Value |
PDBBind | Ki : 24 nM |