PDB Entry (1doj)
PDB ID: 1doj Resolution: 1.7 Å Exp. Method: X-RAY DIFFRACTION
PMID: 11053836 DOI: 10.1107/S0907444900010763
Protein
Protein Name: Prothrombin
Uniprot ID/ACC: P00734 (THRB_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: F2 Gene ID: 2147
Protein Class: HYDROLASE
Ligand
Ligand Name:   RWJ-51438
Canonical SMILES:   CN[C@H](Cc1ccccc1)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCNC(N)=N)C(=O)c1nc2ccc(cc2s1)C(O)=O
Standard InChI:   InChI=1S/C29H35N7O5S/c1-32-21(15-17-7-3-2-4-8-17)27(39)36-14-6-10-22(36)25(38)34-20(9-5-13-33-29(30)31)24(37)26-35-19-12-11-18(28(40)41)16-23(19)42-26/h2-4,7-8,11-12,16,20-22,32H,5-6,9-10,13-15H2,1H3,(H,34,38)(H,40,41)(H4,30,31,33)/t20-,21+,22-/m0/s1
HET Code:   1Z0 PubChem:   11376816
DrugBank:   - ChEMBL:   CHEMBL403929
Molecular Formula:   C29H35N7O5S Mol. Weight:   593.24207 logP:   1.74697
HBD:   6 HBA:   8
#Rotatable Bonds:   13 TPSA:   190.6
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization SER 195 A 19.54 - Ketone
Binding Affinity
Database Name Value
PDBBind Ki : 1.1 nM