PDB Entry (1lhf)
PDB ID: 1lhf Resolution: 2.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 7893672 DOI: 10.1021/bi00011a033
Protein
Protein Name: Prothrombin
Uniprot ID/ACC: P00734 (THRB_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: F2 Gene ID: 2147
Protein Class: HYDROLASE
Ligand
Ligand Name:   AC-(D)PHE-PRO-BOROHOMOLYS-OH
Canonical SMILES:   CC(=O)N[C@H](Cc1ccccc1)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCCCN)B(O)O
Standard InChI:   InChI=1S/C22H35BN4O5/c1-16(28)25-18(15-17-9-4-2-5-10-17)22(30)27-14-8-11-19(27)21(29)26-20(23(31)32)12-6-3-7-13-24/h2,4-5,9-10,18-20,31-32H,3,6-8,11-15,24H2,1H3,(H,25,28)(H,26,29)/t18-,19+,20+/m1/s1
HET Code:   DI4 PubChem:   5288066
DrugBank:   DB07659 ChEMBL:   CHEMBL1232230
Molecular Formula:   C22H35BN4O5 Mol. Weight:   446.27005 logP:   -0.2593
HBD:   5 HBA:   6
#Rotatable Bonds:   12 TPSA:   144.99
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Borylation SER 195 H 15.27 - Boronic Acid
Binding Affinity
Database Name Value
PDBBind Ki : 8.1 nM