PDB Entry (1lhe)
PDB ID: 1lhe Resolution: 2.25 Å Exp. Method: X-RAY DIFFRACTION
PMID: 7893672 DOI: 10.1021/bi00011a033
Protein
Protein Name: Prothrombin
Uniprot ID/ACC: P00734 (THRB_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: F2 Gene ID: 2147
Protein Class: HYDROLASE
Ligand
Ligand Name:   AC-(D)PHE-PRO-BORO-N-BUTYL-AMIDINO-GLYCINE-OH
Canonical SMILES:   CC(=O)N[C@H](Cc1ccccc1)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCCC(N)=N)B(O)O
Standard InChI:   InChI=1S/C22H34BN5O5/c1-15(29)26-17(14-16-8-3-2-4-9-16)22(31)28-13-7-10-18(28)21(30)27-19(23(32)33)11-5-6-12-20(24)25/h2-4,8-9,17-19,32-33H,5-7,10-14H2,1H3,(H3,24,25)(H,26,29)(H,27,30)/t17-,18+,19+/m1/s1
HET Code:   DI3 PubChem:   5288065
DrugBank:   - ChEMBL:   CHEMBL1232229
Molecular Formula:   C22H34BN5O5 Mol. Weight:   459.2653 logP:   -0.28203
HBD:   6 HBA:   6
#Rotatable Bonds:   12 TPSA:   168.84
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Borylation SER 195 H 18.02 - Boronic Acid
Binding Affinity
Database Name Value
PDBBind Ki : 0.29 nM