PDB Entry (6px5) |
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PDB ID: 6px5 | Resolution: 2.4 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31444378 | DOI: 10.1038/s41598-019-48839-1 | |
Protein |
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Protein Name: Prothrombin | |
Uniprot ID/ACC: P00734 (THRB_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: F2 | Gene ID: 2147 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-oxohexan-3-yl]-L-prolinamide | ||
Canonical SMILES: N[C@H](Cc1ccccc1)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCNC(N)=N)C(=O)CCl | ||
Standard InChI: InChI=1S/C21H31ClN6O3/c22-13-18(29)16(8-4-10-26-21(24)25)27-19(30)17-9-5-11-28(17)20(31)15(23)12-14-6-2-1-3-7-14/h1-3,6-7,15-17H,4-5,8-13,23H2,(H,27,30)(H4,24,25,26)/t15-,16+,17+/m1/s1 | ||
HET Code: 0G6 | PubChem: 5311176 | |
DrugBank: - | ChEMBL: CHEMBL307440 | |
Molecular Formula: C21H31ClN6O3 | Mol. Weight: 450.21463 | logP: 0.10337 |
HBD: 5 | HBA: 5 | |
#Rotatable Bonds: 11 | TPSA: 154.4 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | HIS 57 | B | 36.52 | 5.45 | Halomethyl Carbonyl |
Binding Affinity |
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