PDB Entry (1h8i)
PDB ID: 1h8i Resolution: 1.75 Å Exp. Method: X-RAY DIFFRACTION
PMID: 11493008 DOI: 10.1006/JMBI.2001.4872
Protein
Protein Name: Prothrombin
Uniprot ID/ACC: P00734 (THRB_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: F2 Gene ID: 2147
Protein Class: HYDROLASE
Ligand
Ligand Name:   Z-d-Dpa-Pro-Mpgp(OPh)2
Canonical SMILES:   c1ccccc1OP(=O)(Oc2ccccc2)[C@@H](CCCOC)NC(=O)[C@@H]3CCCN3C(=O)[C@@H](C(c4ccccc4)c5ccccc5)NC(=O)OCc6ccccc6
Standard InChI:   InChI=1S/C45H48N3O8P/c1-53-32-18-30-40(57(52,55-37-25-13-5-14-26-37)56-38-27-15-6-16-28-38)46-43(49)39-29-17-31-48(39)44(50)42(47-45(51)54-33-34-19-7-2-8-20-34)41(35-21-9-3-10-22-35)36-23-11-4-12-24-36/h2-16,19-28,39-42H,17-18,29-33H2,1H3,(H,46,49)(H,47,51)/t39-,40-,42+/m0/s1
HET Code:   PHV PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C45H48N3O8P Mol. Weight:   789.31793 logP:   8.3245
HBD:   2 HBA:   8
#Rotatable Bonds:   18 TPSA:   132.5
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Phosphorylation SER 195 H 18.9 - Phosphonate
Binding Affinity
-