PDB Entry (1uma)
PDB ID: 1uma Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 8637015 DOI: 10.1006/jmbi.1996.0292
Protein
Protein Name: Prothrombin
Uniprot ID/ACC: P00734 (THRB_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: F2 Gene ID: 2147
Protein Class: HYDROLASE
Ligand
Ligand Name:   Nalpha-(N,N-dimethylcarbamoyl)-alpha-azalysinep-nitrophenyl ester
Canonical SMILES:   CN(C)C(=O)NN(CCCCN)C(=O)Oc1ccc(cc1)[N+]([O-])=O
Standard InChI:   InChI=1S/C14H21N5O5/c1-17(2)13(20)16-18(10-4-3-9-15)14(21)24-12-7-5-11(6-8-12)19(22)23/h5-8H,3-4,9-10,15H2,1-2H3,(H,16,20)
HET Code:   IN2 PubChem:   126633
DrugBank:   - ChEMBL:   -
Molecular Formula:   C14H21N5O5 Mol. Weight:   339.15427 logP:   1.3207
HBD:   2 HBA:   6
#Rotatable Bonds:   6 TPSA:   131.04
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Acyl Substitution SER 195 H 23.85 - Carbamate
Binding Affinity
-