Ligand
Ligand Name:   Vaborbactam
Ligand Type:   non-polymer
Ligand ID:   COVPDB224 PubChem:   56649692
Synonym(s):  
  •   rpx-7009
  • 1360457-46-0
  • rpx7009
  • unii-1c75676f8v
  • 2-((3r,6s)-2-hydroxy-3-(2-(thiophen-2-yl)acetamido)-1,2-oxaborinan-6-yl)acetic acid
  • chembl3317857
  • 1c75676f8v
  • 2-[(3r,6s)-2-hydroxy-3-[(2-thiophen-2-ylacetyl)amino]oxaborinan-6-yl]acetic acid
  • vaborbactam [inn]
  • rpx 7009
  • vaborbactam. rpx7009
  • vaborbactam (usan/inn)
  • vaborbactam [usan:inn]
  • schembl620289
  • gtpl10871
  • vabomere (vaborbactam + meropenem)
  • ex-a2589
  • bdbm50089084
  • mfcd28502176
  • akos032961376
  • cs-6445
  • db12107
  • sb17184
  • 1,2-oxaborinane-6-acetic acid, 2-hydroxy-3-((2-(2-thienyl)acetyl)amino)-, (3r,6s)-
  • compound 9f [pmid: 25782055]
  • ncgc00510003-01
  • (3r,6s)-
  • hy-19930
  • 2-hydroxy-3-((2-(2-thienyl)acetyl)amino)-
  • d10998
  • q27252228
  • {(3r,6s)-2-hydroxy-3-[(thiophen-2-ylacetyl)amino]-1,2-oxaborinan-6-yl}acetic acid; 2-((3r,6s)-2-hydroxy-3-(2-(thiophen-2-yl)acetamido)-1,2-oxaborinan-6-yl)acetic acid; 2-[(3r,6s)-2-hydroxy-3-[(2-thiophen-2-ylacetyl)amino]oxaborinan-6-yl]acetic acid; 1,2-oxaborinane-6-acetic acid
show 31 synonym(s)
DrugBank:   DB12107 ChEMBL:   CHEMBL3317857
Canonical SMILES:   OB1O[C@H](CC(O)=O)CC[C@@H]1NC(=O)Cc1cccs1
Standard InChI:   InChI=1S/C12H16BNO5S/c15-11(7-9-2-1-5-20-9)14-10-4-3-8(6-12(16)17)19-13(10)18/h1-2,5,8,10,18H,3-4,6-7H2,(H,14,15)(H,16,17)/t8-,10-/m0/s1
Molecular Formula:   C12H16BNO5S Mol. Weight:   297.08423 logP:   0.4488
HBD:   3 HBA:   5
#Rotatable Bonds:   5 TPSA:   95.86

Bound Proteins
Protein Name Uniprot ID/ACC Organism PDB ID HET Code Binding Affinity Binding Database Complex Card
Beta-lactamase Q9L5C7 (Q9L5C7_ECOLX) Escherichia coli 6V7H 4D6
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Carbapenem-hydrolyzing beta-lactamase KPC Q9F663 (BLKPC_KLEPN) Klebsiella pneumoniae 6V7I 4D6
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Carbapenem-hydrolyzing beta-lactamase KPC Q9F663 (BLKPC_KLEPN) Klebsiella pneumoniae 6TD0 4D6
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