PDB Entry (6ett) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6ett | Resolution: 1.26 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31475772 | DOI: 10.1002/cmdc.201900441 | |
Protein |
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Protein Name: Lysine-specific demethylase 4D | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4D | Gene ID: 55693 |
Pocket Descriptors | |
Volume: 2110.85 | Depth: 29.6162 |
Hydrophobicity: 0.675906 | Drug Score: 0.999898 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: ethyl 2-(2~{H}-1,2,3,4-tetrazol-5-yl)ethanoate | ||
HET ID: BXH | PubChem: 543616 | |
DrugBank: - | ChEMBL: CHEMBL1528738 | |
Canonical SMILES: CCOC(=O)Cc1n[nH]nn1 | ||
Standard InChI: InChI=1S/C5H8N4O2/c1-2-11-5(10)3-4-6-8-9-7-4/h2-3H2,1H3,(H,6,7,8,9) | ||
Molecular Formula: C5H8N4O2 | Mol. Weight: 156.14262 | Heavy Atoms: 11 |
Charge: 0 | Is Chiral: False | logP: -0.6947 |
HBD: 1 | HBA: 5 | TPSA: 80.76 |
#Bonds: 12 | #Rotatable Bonds: 4 | Shape Complexity: 0.6 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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