PDB Entry (4y76)

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Visualizer: MichelaNGLo

PDB ID: 4y76 Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 17338508 DOI: 10.1021/jm060870c
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 524.16 Depth: 19.1458
Hydrophobicity: 0.649351 Drug Score: 0.217067
Pocket Similarity: Calculate
Ligand
Ligand Name:   N~2~-[(6-chloronaphthalen-2-yl)sulfonyl]-N~2~-{(3S)-1-[(2S)-1-(4-methyl-1,4-diazepan-1-yl)-1-oxopropan-2-yl]-2-oxopyrrolidin-3-yl}glycinamide
HET ID:   4O1 PubChem:   69329613
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CN1CCCN(CC1)C(=O)[C@@H](N1CC[C@@H](C1=O)N(S(=O)(=O)c1ccc2c(c1)ccc(c2)Cl)CC(=O)N)C
Standard InChI:   InChI=1S/C25H32ClN5O5S/c1-17(24(33)29-10-3-9-28(2)12-13-29)30-11-8-22(25(30)34)31(16-23(27)32)37(35,36)21-7-5-18-14-20(26)6-4-19(18)15-21/h4-7,14-15,17,22H,3,8-13,16H2,1-2H3,(H2,27,32)/t17-,22-/m0/s1
Molecular Formula:   C25H32ClN5O5S Mol. Weight:   550.07007 Heavy Atoms:   37
Charge:   0 Is Chiral:   True logP:   2.7175
HBD:   1 HBA:   10 TPSA:   132.71
#Bonds:   42 #Rotatable Bonds:   8 Shape Complexity:   0.48
Stereocomplexity:   0.08 Ligand Type:   Small Molecule
Binding Affinity
-