PDB Entry (5h15)

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Visualizer: MichelaNGLo

PDB ID: 5h15 Resolution: 2.27 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28072869 DOI: 10.1371/journal.pone.0169855
Protein
Protein Name: Polycomb protein EED
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O75530 (EED_HUMAN) Organism: Homo sapiens
Gene Symbol: EED Gene ID: 8726
Pocket Descriptors
Volume: 941.504 Depth: 34.5482
Hydrophobicity: 0.678404 Drug Score: 0.408333
Pocket Similarity: Calculate
Ligand
Ligand Name:   (3R,4S)-1-[(2-methoxyphenyl)methyl]-N,N-dimethyl-4-(1-methylindol-3-yl)pyrrolidin-3-amine
HET ID:   LQD PubChem:   124037093
DrugBank:   - ChEMBL:   CHEMBL4074159
Canonical SMILES:   COc1ccccc1CN1C[C@@H]([C@H](C1)c1cn(c2c1cccc2)C)N(C)C
Standard InChI:   InChI=1S/C23H29N3O/c1-24(2)22-16-26(13-17-9-5-8-12-23(17)27-4)15-20(22)19-14-25(3)21-11-7-6-10-18(19)21/h5-12,14,20,22H,13,15-16H2,1-4H3/t20-,22+/m1/s1
Molecular Formula:   C23H29N3O Mol. Weight:   363.49585 Heavy Atoms:   27
Charge:   0 Is Chiral:   True logP:   3.6544
HBD:   0 HBA:   4 TPSA:   20.64
#Bonds:   32 #Rotatable Bonds:   5 Shape Complexity:   0.39130434
Stereocomplexity:   0.08695652 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 1570 nM