PDB Entry (9xia)
PDB ID: 9xia Resolution: 1.9 Å Exp. Method: X-RAY DIFFRACTION
PMID: 2734296 DOI: 10.1073/pnas.86.12.4440
Protein
Protein Name: Xylose isomerase
Uniprot ID/ACC: P24300 (XYLA_STRRU) Organism: Streptomyces rubiginosus
Gene Symbol: xylA Gene ID: -
Protein Class: ISOMERASE
Ligand
Ligand Name:   (E)-3-deoxy-3-(fluoromethylidene)-D-glucose
Canonical SMILES:   OC[C@@H](O)[C@@H](O)C(=C/F)\[C@@H](O)C=O
Standard InChI:   InChI=1S/C7H11FO5/c8-1-4(5(11)2-9)7(13)6(12)3-10/h1-2,5-7,10-13H,3H2/b4-1-/t5-,6+,7-/m0/s1
HET Code:   DFR PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C7H11FO5 Mol. Weight:   194.05905 logP:   -1.8863
HBD:   4 HBA:   5
#Rotatable Bonds:   5 TPSA:   97.99
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Composite Reaction HIS 54 A None 2.29 Vinyl Halide
Binding Affinity
-