PDB Entry (5fsd)
PDB ID: 5fsd Resolution: 1.75 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26961812 DOI: 10.1039/C6DT00652C
Protein
Protein Name: Urease subunit alpha
Uniprot ID/ACC: P41020 (URE1_SPOPA) Organism: Sporosarcina pasteurii (Bacillus pasteurii)
Gene Symbol: ureC Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   Benzoquinone
Canonical SMILES:   O=C1C=CC(=O)C=C1
Standard InChI:   InChI=1S/C6H4O2/c7-5-1-2-6(8)4-3-5/h1-4H
HET Code:   DBX PubChem:   4650
DrugBank:   - ChEMBL:   CHEMBL8320
Molecular Formula:   C6H4O2 Mol. Weight:   108.021126 logP:   0.2506
HBD:   0 HBA:   2
#Rotatable Bonds:   0 TPSA:   34.14
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Composite Reaction CYS 322 C 85.38 10.9 Vinyl Carbonyl
Binding Affinity
-