PDB Entry (1nym) |
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PDB ID: 1nym | Resolution: 1.2 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 12859188 | DOI: 10.1021/bi034242y | |
Protein |
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Protein Name: Beta-lactamase TEM | |
Uniprot ID/ACC: P62593 (BLAT_ECOLX) | Organism: Escherichia coli |
Gene Symbol: bla | Gene ID: 58463483 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: [(2-AMINO-ALPHA-METHOXYIMINO-4-THIAZOLYLACETYL)AMINO]METHYLBORONIC ACID | ||
Canonical SMILES: OB(O)CNC(=O)/C(=N\OC)c1csc(n1)N | ||
Standard InChI: InChI=1S/C7H11BN4O4S/c1-16-12-5(4-2-17-7(9)11-4)6(13)10-3-8(14)15/h2,14-15H,3H2,1H3,(H2,9,11)(H,10,13)/b12-5- | ||
HET Code: CXB | PubChem: 6323277 | |
DrugBank: - | ChEMBL: CHEMBL3347499 | |
Molecular Formula: C7H11BN4O4S | Mol. Weight: 258.05942 | logP: -1.796 |
HBD: 4 | HBA: 8 | |
#Rotatable Bonds: 5 | TPSA: 130.06 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Borylation | SER 70 | A | 10.35 | - | Boronic Acid |
Binding Affinity |
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Database Name | Value |
PDBBind | Ki : 4000 nM |