PDB Entry (6k38)
PDB ID: 6k38 Resolution: 1.78 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32042199 DOI: 10.1038/s41589-019-0461-9
Protein
Protein Name: (S)-8-amino-7-oxononanoate synthase BioU
Uniprot ID/ACC: Q55650 (BIOU_SYNY3) Organism: Synechocystis sp. (strain PCC 6803 / Kazusa)
Gene Symbol: bioU Gene ID: -
Protein Class: OXIDOREDUCTASE
Ligand
Ligand Name:   8-amino-7-oxononanoate
Canonical SMILES:   C[C@H](N)C(=O)CCCCCC(O)=O
Standard InChI:   InChI=1S/C9H17NO3/c1-7(10)8(11)5-3-2-4-6-9(12)13/h7H,2-6,10H2,1H3,(H,12,13)/t7-/m0/s1
HET Code:   CWF PubChem:   448124
DrugBank:   DB02274 ChEMBL:   CHEMBL1233817
Molecular Formula:   C9H17NO3 Mol. Weight:   187.12085 logP:   0.9378
HBD:   2 HBA:   3
#Rotatable Bonds:   7 TPSA:   80.39
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 124 A 67.66 8.76 Ketone
Binding Affinity
-