PDB Entry (4imq) |
||
| ||
PDB ID: 4imq | Resolution: 1.5 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 23365454 | DOI: 10.1128/JVI.02869-12 | |
Protein |
|
Protein Name: Genome polyprotein | |
Uniprot ID/ACC: Q83883 (POLG_NVN68) | Organism: Norwalk virus (strain GI/Human/United States/Norwalk/1968) (Hu/NV/NV/1968/US) |
Gene Symbol: ORF1 | Gene ID: 1491970 |
Protein Class: HYDROLASE |
Ligand |
||
Ligand Name: peptide inhibitor, syc8 | ||
Canonical SMILES: c1ccccc1C[C@@H](C(=O)N[C@H](C=O)CNC(=O)C)NC(=O)[C@H](CC(C)C)NC(=O)OCc2ccccc2 | ||
Standard InChI: InChI=1S/C28H36N4O6/c1-19(2)14-24(32-28(37)38-18-22-12-8-5-9-13-22)27(36)31-25(15-21-10-6-4-7-11-21)26(35)30-23(17-33)16-29-20(3)34/h4-13,17,19,23-25H,14-16,18H2,1-3H3,(H,29,34)(H,30,35)(H,31,36)(H,32,37)/t23-,24-,25-/m0/s1 | ||
HET Code: 1HD | PubChem: 501956 | |
DrugBank: - | ChEMBL: CHEMBL95007 | |
Molecular Formula: C28H36N4O6 | Mol. Weight: 524.2635 | logP: 1.8748 |
HBD: 4 | HBA: 6 | |
#Rotatable Bonds: 14 | TPSA: 142.7 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemi(thio)acetalization | CYS 139 | A | 2.23 | 13.51 | Aldehyde |
Binding Affinity |
||
- |