PDB Entry (4imq)
PDB ID: 4imq Resolution: 1.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 23365454 DOI: 10.1128/JVI.02869-12
Protein
Protein Name: Genome polyprotein
Uniprot ID/ACC: Q83883 (POLG_NVN68) Organism: Norwalk virus (strain GI/Human/United States/Norwalk/1968) (Hu/NV/NV/1968/US)
Gene Symbol: ORF1 Gene ID: 1491970
Protein Class: HYDROLASE
Ligand
Ligand Name:   peptide inhibitor, syc8
Canonical SMILES:   c1ccccc1C[C@@H](C(=O)N[C@H](C=O)CNC(=O)C)NC(=O)[C@H](CC(C)C)NC(=O)OCc2ccccc2
Standard InChI:   InChI=1S/C28H36N4O6/c1-19(2)14-24(32-28(37)38-18-22-12-8-5-9-13-22)27(36)31-25(15-21-10-6-4-7-11-21)26(35)30-23(17-33)16-29-20(3)34/h4-13,17,19,23-25H,14-16,18H2,1-3H3,(H,29,34)(H,30,35)(H,31,36)(H,32,37)/t23-,24-,25-/m0/s1
HET Code:   1HD PubChem:   501956
DrugBank:   - ChEMBL:   CHEMBL95007
Molecular Formula:   C28H36N4O6 Mol. Weight:   524.2635 logP:   1.8748
HBD:   4 HBA:   6
#Rotatable Bonds:   14 TPSA:   142.7
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 139 A 2.23 13.51 Aldehyde
Binding Affinity
-