PDB Entry (1lxy) |
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PDB ID: 1lxy | Resolution: 2.0 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 15062088 | DOI: 10.1016/j.str.2004.02.017 | |
Protein |
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Protein Name: Arginine deiminase | |
Uniprot ID/ACC: P23793 (ARCA_MYCAR) | Organism: Mycoplasma arginini |
Gene Symbol: arcA | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: L-citrulline | ||
Canonical SMILES: N[C@@H](CCCNC(N)=O)C(O)=O | ||
Standard InChI: InChI=1S/C6H13N3O3/c7-4(5(10)11)2-1-3-9-6(8)12/h4H,1-3,7H2,(H,10,11)(H3,8,9,12)/t4-/m0/s1 | ||
HET Code: CIR | PubChem: 9750 | |
DrugBank: DB00155 | ChEMBL: CHEMBL444814 | |
Molecular Formula: C6H13N3O3 | Mol. Weight: 175.09569 | logP: -1.1532 |
HBD: 4 | HBA: 3 | |
#Rotatable Bonds: 5 | TPSA: 118.44 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Addition to a Double Bond | CYS 398 | A | 3.18 | 14.75 | Carbamide |
Binding Affinity |
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