PDB Entry (4r3j)
PDB ID: 4r3j Resolution: 2.44 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: -
Protein
Protein Name: Peptidoglycan glycosyltransferase
Uniprot ID/ACC: C8W8H7 (C8W8H7_ATOPD) Organism: Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) (Streptococcus parvulus) (Peptostreptococcus parvulus)
Gene Symbol: Apar_1344 Gene ID: -
Protein Class: TRANSFERASE
Ligand
Ligand Name:   cefapirin
Canonical SMILES:   CC(=O)OCC1=C(N2[C@H](SC1)[C@H](NC(=O)CSc1ccncc1)C2=O)C(O)=O
Standard InChI:   InChI=1S/C17H17N3O6S2/c1-9(21)26-6-10-7-28-16-13(15(23)20(16)14(10)17(24)25)19-12(22)8-27-11-2-4-18-5-3-11/h2-5,13,16H,6-8H2,1H3,(H,19,22)(H,24,25)/t13-,16-/m1/s1
HET Code:   CFU PubChem:   30699
DrugBank:   DB01139 ChEMBL:   CHEMBL1599
Molecular Formula:   C17H17N3O6S2 Mol. Weight:   423.05588 logP:   0.4754
HBD:   2 HBA:   8
#Rotatable Bonds:   7 TPSA:   125.9
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Beta-Lactam Addition SER 682 A 15.72 - Beta-Lactam
Binding Affinity
-