PDB Entry (5d63)
PDB ID: 5d63 Resolution: 1.65 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26901797 DOI: 10.1371/journal.pone.0149407
Protein
Protein Name: Agglutinin
Uniprot ID/ACC: Q8X123 (Q8X123_9AGAR) Organism: Marasmius oreades
Gene Symbol: - Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   N-[(benzyloxy)carbonyl]-L-valyl-N-[(1S)-1-(carboxymethyl)-3-fluoro-2-oxopropyl]-L-alaninamide
Canonical SMILES:   CC(C)[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(O)=O)C(=O)CF
Standard InChI:   InChI=1S/C21H28FN3O7/c1-12(2)18(25-21(31)32-11-14-7-5-4-6-8-14)20(30)23-13(3)19(29)24-15(9-17(27)28)16(26)10-22/h4-8,12-13,15,18H,9-11H2,1-3H3,(H,23,30)(H,24,29)(H,25,31)(H,27,28)/t13-,15-,18-/m0/s1
HET Code:   CF0 PubChem:   5497171
DrugBank:   DB07744 ChEMBL:   CHEMBL205821
Molecular Formula:   C21H28FN3O7 Mol. Weight:   453.19113 logP:   0.9402
HBD:   4 HBA:   6
#Rotatable Bonds:   12 TPSA:   150.9
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 215 A 0.36 8.73 Halomethyl Carbonyl
Binding Affinity
-