PDB Entry (2vt0)
PDB ID: 2vt0 Resolution: 2.15 Å Exp. Method: X-RAY DIFFRACTION
PMID: 18783340 DOI: 10.1515/BC.2008.163
Protein
Protein Name: Lysosomal acid glucosylceramidase
Uniprot ID/ACC: P04062 (GLCM_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: GBA Gene ID: 2629
Protein Class: HYDROLASE
Ligand
Ligand Name:   conduritol-beta-epoxide
Canonical SMILES:   [C@@H]12[C@H](O2)[C@H](O)[C@@H](O)[C@H](O)[C@H]1O
Standard InChI:   InChI=1S/C6H10O5/c7-1-2(8)4(10)6-5(11-6)3(1)9/h1-10H/t1-,2-,3+,4+,5-,6+/m0/s1
HET Code:   CBU PubChem:   119054
DrugBank:   - ChEMBL:   CHEMBL291020
Molecular Formula:   C6H10O5 Mol. Weight:   162.05283 logP:   -2.789
HBD:   4 HBA:   5
#Rotatable Bonds:   0 TPSA:   93.45
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Epoxide Opening GLU 340 B 17.34 9.57 Epoxide
Binding Affinity
-