PDB Entry (1red)
PDB ID: 1red Resolution: 1.6 Å Exp. Method: X-RAY DIFFRACTION
PMID: 8755744 DOI: 10.1021/bi953052n
Protein
Protein Name: Endo-1,4-beta-xylanase 2
Uniprot ID/ACC: P36217 (XYN2_HYPJR) Organism: Hypocrea jecorina (strain ATCC 56765 / BCRC 32924 / NRRL 11460 / Rut C-30) (Trichoderma reesei)
Gene Symbol: xyn2 Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   4,5-EPOXYPENTYL-BETA-D-XYLOSIDE
Canonical SMILES:   C1O[C@@H]1CCCO[C@H]2[C@H](O)[C@@H](O)[C@@H](CO2)O
Standard InChI:   InChI=1S/C10H18O6/c11-7-5-16-10(9(13)8(7)12)14-3-1-2-6-4-15-6/h6-13H,1-5H2/t6-,7-,8+,9-,10-/m1/s1
HET Code:   C5X PubChem:   5287872
DrugBank:   - ChEMBL:   CHEMBL1231616
Molecular Formula:   C10H18O6 Mol. Weight:   234.11034 logP:   -1.379
HBD:   3 HBA:   6
#Rotatable Bonds:   5 TPSA:   91.68
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Epoxide Opening GLU 86 B 13.87 8.51 Epoxide
Binding Affinity
-