PDB Entry (6azs)
PDB ID: 6azs Resolution: 1.59 Å Exp. Method: X-RAY DIFFRACTION
PMID: 29425231 DOI: 10.1371/journal.pone.0192736
Protein
Protein Name: Putative amidase
Uniprot ID/ACC: Q1M7F4 (Q1M7F4_RHIL3) Organism: Rhizobium leguminosarum bv. viciae (strain 3841)
Gene Symbol: pRL100352 Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   N-carbamoyl-D-aspartic acid
Canonical SMILES:   NC(=O)N[C@H](CC(O)=O)C(O)=O
Standard InChI:   InChI=1S/C5H8N2O5/c6-5(12)7-2(4(10)11)1-3(8)9/h2H,1H2,(H,8,9)(H,10,11)(H3,6,7,12)/t2-/m1/s1
HET Code:   C5S PubChem:   1550569
DrugBank:   - ChEMBL:   CHEMBL1742172
Molecular Formula:   C5H8N2O5 Mol. Weight:   176.04332 logP:   -1.4174
HBD:   4 HBA:   3
#Rotatable Bonds:   4 TPSA:   129.72
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Acyl Substitution CYS 175 B 6.47 18.48 Carbamide
Binding Affinity
-