PDB Entry (6azs) |
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PDB ID: 6azs | Resolution: 1.59 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 29425231 | DOI: 10.1371/journal.pone.0192736 | |
Protein |
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Protein Name: Putative amidase | |
Uniprot ID/ACC: Q1M7F4 (Q1M7F4_RHIL3) | Organism: Rhizobium leguminosarum bv. viciae (strain 3841) |
Gene Symbol: pRL100352 | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: N-carbamoyl-D-aspartic acid | ||
Canonical SMILES: NC(=O)N[C@H](CC(O)=O)C(O)=O | ||
Standard InChI: InChI=1S/C5H8N2O5/c6-5(12)7-2(4(10)11)1-3(8)9/h2H,1H2,(H,8,9)(H,10,11)(H3,6,7,12)/t2-/m1/s1 | ||
HET Code: C5S | PubChem: 1550569 | |
DrugBank: - | ChEMBL: CHEMBL1742172 | |
Molecular Formula: C5H8N2O5 | Mol. Weight: 176.04332 | logP: -1.4174 |
HBD: 4 | HBA: 3 | |
#Rotatable Bonds: 4 | TPSA: 129.72 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Acyl Substitution | CYS 175 | B | 6.47 | 18.48 | Carbamide |
Binding Affinity |
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