PDB Entry (1ref)
PDB ID: 1ref Resolution: 1.8 Å Exp. Method: X-RAY DIFFRACTION
PMID: 8755744 DOI: 10.1021/bi953052n
Protein
Protein Name: Endo-1,4-beta-xylanase 2
Uniprot ID/ACC: P36217 (XYN2_HYPJR) Organism: Hypocrea jecorina (strain ATCC 56765 / BCRC 32924 / NRRL 11460 / Rut C-30) (Trichoderma reesei)
Gene Symbol: xyn2 Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   2,3-EPOXYPROPYL-BETA-D-XYLOSIDE
Canonical SMILES:   C1O[C@H]1CO[C@H]2[C@H](O)[C@@H](O)[C@@H](CO2)O
Standard InChI:   InChI=1S/C8H14O6/c9-5-3-14-8(7(11)6(5)10)13-2-4-1-12-4/h4-11H,1-3H2/t4-,5-,6+,7-,8-/m1/s1
HET Code:   C3X PubChem:   5287868
DrugBank:   - ChEMBL:   CHEMBL1231593
Molecular Formula:   C8H14O6 Mol. Weight:   206.07904 logP:   -2.1592
HBD:   3 HBA:   6
#Rotatable Bonds:   3 TPSA:   91.68
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Epoxide Opening GLU 86 B 16.91 7.52 Epoxide
Binding Affinity
-