PDB Entry (4wkt) |
||
| ||
PDB ID: 4wkt | Resolution: 1.78 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 25290020 | DOI: 10.1021/bi501086s | |
Protein |
|
Protein Name: Acyl-homoserine lactone acylase PvdQ | |
Uniprot ID/ACC: Q9I194 (PVDQ_PSEAE) | Organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) |
Gene Symbol: pvdQ | Gene ID: 882260 |
Protein Class: HYDROLASE |
Ligand |
||
Ligand Name: butylboronic acid | ||
Canonical SMILES: OB(O)CCCC | ||
Standard InChI: InChI=1S/C4H11BO2/c1-2-3-4-5(6)7/h6-7H,2-4H2,1H3 | ||
HET Code: BUB | PubChem: 20479 | |
DrugBank: DB02664 | ChEMBL: CHEMBL31962 | |
Molecular Formula: C4H11BO2 | Mol. Weight: 102.08521 | logP: 0.2593 |
HBD: 2 | HBA: 2 | |
#Rotatable Bonds: 3 | TPSA: 40.46 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Borylation | SER 217 | C | 11.13 | - | Boronic Acid |
Binding Affinity |
|
Database Name | Value |
PDBBind | Ki : 0.55 nM |
BindingDB | Ki : 550000 nM |
Binding MOAD | Ki : 550000 nM |