PDB Entry (5eky)
PDB ID: 5eky Resolution: 1.1 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30155096 DOI: 10.1039/c5sc04574f
Protein
Protein Name: Deoxyribose-phosphate aldolase
Uniprot ID/ACC: P0A6L0 (DEOC_ECOLI) Organism: Escherichia coli (strain K12)
Gene Symbol: deoC Gene ID: 948902
Protein Class: LYASE
Ligand
Ligand Name:   (3S)‐3‐hydroxybutanal
Canonical SMILES:   C[C@H](O)CC=O
Standard InChI:   InChI=1S/C4H8O2/c1-4(6)2-3-5/h3-4,6H,2H2,1H3/t4-/m0/s1
HET Code:   BU2 PubChem:   15558214
DrugBank:   - ChEMBL:   -
Molecular Formula:   C4H8O2 Mol. Weight:   88.05243 logP:   -0.0438
HBD:   1 HBA:   2
#Rotatable Bonds:   2 TPSA:   37.3
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemiaminalization LYS 167 A 9.14 6.62 Aldehyde
Binding Affinity
-