PDB Entry (5eky) |
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PDB ID: 5eky | Resolution: 1.1 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 30155096 | DOI: 10.1039/c5sc04574f | |
Protein |
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Protein Name: Deoxyribose-phosphate aldolase | |
Uniprot ID/ACC: P0A6L0 (DEOC_ECOLI) | Organism: Escherichia coli (strain K12) |
Gene Symbol: deoC | Gene ID: 948902 |
Protein Class: LYASE |
Ligand |
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Ligand Name: (3S)‐3‐hydroxybutanal | ||
Canonical SMILES: C[C@H](O)CC=O | ||
Standard InChI: InChI=1S/C4H8O2/c1-4(6)2-3-5/h3-4,6H,2H2,1H3/t4-/m0/s1 | ||
HET Code: BU2 | PubChem: 15558214 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C4H8O2 | Mol. Weight: 88.05243 | logP: -0.0438 |
HBD: 1 | HBA: 2 | |
#Rotatable Bonds: 2 | TPSA: 37.3 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemiaminalization | LYS 167 | A | 9.14 | 6.62 | Aldehyde |
Binding Affinity |
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