PDB Entry (6nd3) |
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PDB ID: 6nd3 | Resolution: 2.36 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 30557011 | DOI: 10.1021/jacs.8b04883 | |
Protein |
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Protein Name: Choline trimethylamine-lyase | |
Uniprot ID/ACC: Q30W70 (CUTC_DESAG) | Organism: Desulfovibrio alaskensis (strain ATCC BAA 1058 / DSM 17464 / G20) (Desulfovibrio desulfuricans (strain G20)) |
Gene Symbol: cutC | Gene ID: - |
Protein Class: LYASE |
Ligand |
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Ligand Name: BETAINE ALDEHYDE | ||
Canonical SMILES: C[N+](C)(C)CC=O | ||
Standard InChI: InChI=1S/C5H12NO/c1-6(2,3)4-5-7/h5H,4H2,1-3H3/q+1 | ||
HET Code: BTL | PubChem: 249 | |
DrugBank: DB04401 | ChEMBL: CHEMBL1231491 | |
Molecular Formula: C5H12NO+ | Mol. Weight: 102.09134 | logP: -0.1085 |
HBD: 0 | HBA: 1 | |
#Rotatable Bonds: 2 | TPSA: 17.07 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemi(thio)acetalization | CYS 489 | A | 6.6 | 15.34 | Aldehyde |
Binding Affinity |
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