PDB Entry (6nd3)
PDB ID: 6nd3 Resolution: 2.36 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30557011 DOI: 10.1021/jacs.8b04883
Protein
Protein Name: Choline trimethylamine-lyase
Uniprot ID/ACC: Q30W70 (CUTC_DESAG) Organism: Desulfovibrio alaskensis (strain ATCC BAA 1058 / DSM 17464 / G20) (Desulfovibrio desulfuricans (strain G20))
Gene Symbol: cutC Gene ID: -
Protein Class: LYASE
Ligand
Ligand Name:   BETAINE ALDEHYDE
Canonical SMILES:   C[N+](C)(C)CC=O
Standard InChI:   InChI=1S/C5H12NO/c1-6(2,3)4-5-7/h5H,4H2,1-3H3/q+1
HET Code:   BTL PubChem:   249
DrugBank:   DB04401 ChEMBL:   CHEMBL1231491
Molecular Formula:   C5H12NO+ Mol. Weight:   102.09134 logP:   -0.1085
HBD:   0 HBA:   1
#Rotatable Bonds:   2 TPSA:   17.07
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 489 A 6.6 15.34 Aldehyde
Binding Affinity
-