PDB Entry (4b4z) |
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PDB ID: 4b4z | Resolution: 2.2 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: - | |
Protein |
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Protein Name: D-alanyl-D-alanine carboxypeptidase | |
Uniprot ID/ACC: P39045 (DAC_ACTSP) | Organism: Actinomadura sp. (strain R39) |
Gene Symbol: dac | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: (phenylmethylsulfonylamino)methylboronic acid | ||
Canonical SMILES: OB(O)CNS(=O)(=O)Cc1ccccc1 | ||
Standard InChI: InChI=1S/C8H12BNO4S/c11-9(12)7-10-15(13,14)6-8-4-2-1-3-5-8/h1-5,10-12H,6-7H2 | ||
HET Code: BSF | PubChem: 49837085 | |
DrugBank: - | ChEMBL: CHEMBL1231476 | |
Molecular Formula: C8H12BNO4S | Mol. Weight: 229.05801 | logP: -0.882 |
HBD: 3 | HBA: 4 | |
#Rotatable Bonds: 5 | TPSA: 86.63 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Composite Reaction | LYS 410 | A | 0.25 | 4.06 | Boronic Acid | |
Composite Reaction | SER 298 | A | 22.53 | - | Boronic Acid | |
Composite Reaction | SER 49 | A | 14.52 | - | Boronic Acid |
Binding Affinity |
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