PDB Entry (4b4z)
PDB ID: 4b4z Resolution: 2.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: -
Protein
Protein Name: D-alanyl-D-alanine carboxypeptidase
Uniprot ID/ACC: P39045 (DAC_ACTSP) Organism: Actinomadura sp. (strain R39)
Gene Symbol: dac Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   (phenylmethylsulfonylamino)methylboronic acid
Canonical SMILES:   OB(O)CNS(=O)(=O)Cc1ccccc1
Standard InChI:   InChI=1S/C8H12BNO4S/c11-9(12)7-10-15(13,14)6-8-4-2-1-3-5-8/h1-5,10-12H,6-7H2
HET Code:   BSF PubChem:   49837085
DrugBank:   - ChEMBL:   CHEMBL1231476
Molecular Formula:   C8H12BNO4S Mol. Weight:   229.05801 logP:   -0.882
HBD:   3 HBA:   4
#Rotatable Bonds:   5 TPSA:   86.63
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Composite Reaction LYS 410 A 0.25 4.06 Boronic Acid
Composite Reaction SER 298 A 22.53 - Boronic Acid
Composite Reaction SER 49 A 14.52 - Boronic Acid
Binding Affinity
-