PDB Entry (4gdb)
PDB ID: 4gdb Resolution: 1.84 Å Exp. Method: X-RAY DIFFRACTION
PMID: 23145056 DOI: 10.1371/journal.pone.0049035
Protein
Protein Name: Beta-lactamase SHV-1
Uniprot ID/ACC: P0AD64 (BLA1_KLEPN) Organism: Klebsiella pneumoniae
Gene Symbol: bla Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   penem 1
Canonical SMILES:   OC(=O)C1=CS[C@H]2N1C(=O)\C2=C\c1cc2CSCn2n1
Standard InChI:   InChI=1S/C12H9N3O3S2/c16-10-8(11-15(10)9(4-20-11)12(17)18)2-6-1-7-3-19-5-14(7)13-6/h1-2,4,11H,3,5H2,(H,17,18)/b8-2-/t11-/m1/s1
HET Code:   17O PubChem:   53319078
DrugBank:   - ChEMBL:   CHEMBL1673091
Molecular Formula:   C12H9N3O3S2 Mol. Weight:   307.00854 logP:   1.3119
HBD:   1 HBA:   6
#Rotatable Bonds:   2 TPSA:   75.43
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Beta-Lactam Addition SER 70 A 11.35 - Beta-Lactam
Binding Affinity
-