PDB Entry (6ocg) |
||
| ||
PDB ID: 6ocg | Resolution: 1.83 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31235910 | DOI: 10.1038/s41594-019-0242-x | |
Protein |
|
Protein Name: Tubulinyl-Tyr carboxypeptidase 1 | |
Uniprot ID/ACC: Q7L8A9 (VASH1_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: VASH1 | Gene ID: 22846 |
Protein Class: HYDROLASE |
Ligand |
||
Ligand Name: EpoY | ||
Canonical SMILES: CCOC(=O)[C@H]1O[C@@H]1C(=O)N[C@@H](Cc1ccc(O)cc1)C(O)=O | ||
Standard InChI: InChI=1S/C15H17NO7/c1-2-22-15(21)12-11(23-12)13(18)16-10(14(19)20)7-8-3-5-9(17)6-4-8/h3-6,10-12,17H,2,7H2,1H3,(H,16,18)(H,19,20)/t10-,11-,12-/m0/s1 | ||
HET Code: BJL | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C15H17NO7 | Mol. Weight: 323.1005 | logP: -0.1654 |
HBD: 3 | HBA: 6 | |
#Rotatable Bonds: 7 | TPSA: 125.46 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Epoxide Opening | CYS 169 | A | 26.38 | 14.17 | Epoxide |
Binding Affinity |
||
- |