PDB Entry (4amw) |
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PDB ID: 4amw | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 23902768 | DOI: 10.1074/JBC.M113.485896 | |
Protein |
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Protein Name: Alpha-1,4-glucan lyase isozyme 1 | |
Uniprot ID/ACC: Q9STC1 (Q9STC1_GRALE) | Organism: Gracilariopsis lemaneiformis (Red alga) (Gracilaria lemaneiformis) |
Gene Symbol: Ag111 | Gene ID: - |
Protein Class: LYASE |
Ligand |
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Ligand Name: 5-fluoro-alpha-L-idopyranose | ||
Canonical SMILES: OC[C@@]1(F)[C@@H](O)[C@H](O)[C@@H](O)[C@@H](O1)O | ||
Standard InChI: InChI=1S/C6H11FO6/c7-6(1-8)4(11)2(9)3(10)5(12)13-6/h2-5,8-12H,1H2/t2-,3-,4+,5-,6+/m1/s1 | ||
HET Code: B9D | PubChem: 44241502 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C6H11FO6 | Mol. Weight: 198.05397 | logP: -2.9242 |
HBD: 5 | HBA: 6 | |
#Rotatable Bonds: 1 | TPSA: 110.38 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Acyl Substitution | ASP 553 | A | 11.45 | 6.64 | Hemiacetal |
Binding Affinity |
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