PDB Entry (6ein)
PDB ID: 6ein Resolution: 2.11 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: -
Protein
Protein Name: Lysine-specific demethylase 5B
Uniprot ID/ACC: Q9UGL1 (KDM5B_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: KDM5B Gene ID: 10765
Protein Class: OXIDOREDUCTASE
Ligand
Ligand Name:   S49365a
Canonical SMILES:   C(C=C)(=O)N1CCN(CC1)CCC=1C=NN(C1)C1=NC=CC2=C1N=CNC2=O
Standard InChI:   InChI=1S/C19H21N7O2/c1-2-16(27)25-9-7-24(8-10-25)6-4-14-11-23-26(12-14)18-17-15(3-5-20-18)19(28)22-13-21-17/h2-3,5,11-13H,1,4,6-10H2,(H,21,22,28)
HET Code:   B7Z PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C19H20N7O2 Mol. Weight:   379.424 logP:   0.25
HBD:   1 HBA:   6
#Rotatable Bonds:   5 TPSA:   95.72
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 480 A 97.97 9.65 Vinyl Carbonyl
Binding Affinity
-