PDB Entry (4y8l) |
||
| ||
PDB ID: 4y8l | Resolution: 2.4 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26020686 | DOI: 10.1021/jacs.5b03688 | |
Protein |
|
Protein Name: Proteasome subunit beta type-5 | |
Uniprot ID/ACC: P30656 (PSB5_YEAST) | Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) |
Gene Symbol: PRE2 | Gene ID: 856218 |
Protein Class: HYDROLASE |
Ligand |
||
Ligand Name: Ac-APLL-ep | ||
Canonical SMILES: O=C(C)N[C@@H](C)C(=O)N1[C@@H](CCC1)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(=O)[C@]2(C)CO2 | ||
Standard InChI: InChI=1S/C25H42N4O6/c1-14(2)11-18(21(31)25(7)13-35-25)27-22(32)19(12-15(3)4)28-23(33)20-9-8-10-29(20)24(34)16(5)26-17(6)30/h14-16,18-20H,8-13H2,1-7H3,(H,26,30)(H,27,32)(H,28,33)/t16-,18-,19-,20-,25-/m0/s1 | ||
HET Code: 05W | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C25H42N4O6 | Mol. Weight: 494.31042 | logP: 0.9218 |
HBD: 3 | HBA: 6 | |
#Rotatable Bonds: 12 | TPSA: 137.21 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Cyclohemiaminoacetalization | THR 1 | A | 72.11 | - | Epoxide |
Binding Affinity |
||
- |