PDB Entry (1gbd)
PDB ID: 1gbd Resolution: 2.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 7500345 DOI: 10.1006/jmbi.1995.0650
Protein
Protein Name: Alpha-lytic protease
Uniprot ID/ACC: P00778 (PRLA_LYSEN) Organism: Lysobacter enzymogenes
Gene Symbol: alphaLP Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   O-methylsuccinyl-alanyl-alanyl-prolyl-borophenylalanine
Canonical SMILES:   COC(=O)CCC(=O)N[C@@H](C)C(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@H](B(O)O)Cc2ccccc2
Standard InChI:   InChI=1S/C24H35BN4O8/c1-15(26-20(30)11-12-21(31)37-3)22(32)27-16(2)24(34)29-13-7-10-18(29)23(33)28-19(25(35)36)14-17-8-5-4-6-9-17/h4-6,8-9,15-16,18-19,35-36H,7,10-14H2,1-3H3,(H,26,30)(H,27,32)(H,28,33)/t15-,16-,18-,19-/m0/s1
HET Code:   B2F PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C24H35BN4O8 Mol. Weight:   518.2548 logP:   -1.3205
HBD:   5 HBA:   8
#Rotatable Bonds:   12 TPSA:   174.37
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Borylation SER 195 A 10.7 - Boronic Acid
Binding Affinity
-