PDB Entry (4lfd)
PDB ID: 4lfd Resolution: 2.49 Å Exp. Method: X-RAY DIFFRACTION
PMID: 24519933 DOI: 10.1074/jbc.M113.509273
Protein
Protein Name: Sortase B
Uniprot ID/ACC: A0A0H2XI76 (A0A0H2XI76_STAA3) Organism: Staphylococcus aureus (strain USA300)
Gene Symbol: srtB Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   (CBZ)NPQ(B27) peptide
Canonical SMILES:   C[C@@H](O)[C@@H](CS)NC(=O)[C@H](CCC(=O)N)NC(=O)[C@@H]1CCCN1C(=O)[C@H](CC(=O)N)NC(=O)OCc2ccccc2
Standard InChI:   InChI=1S/C26H38N6O8S/c1-15(33)19(14-41)30-23(36)17(9-10-21(27)34)29-24(37)20-8-5-11-32(20)25(38)18(12-22(28)35)31-26(39)40-13-16-6-3-2-4-7-16/h2-4,6-7,15,17-20,33,41H,5,8-14H2,1H3,(H2,27,34)(H2,28,35)(H,29,37)(H,30,36)(H,31,39)/t15-,17+,18+,19-,20+/m1/s1
HET Code:   B27 PubChem:   44405056
DrugBank:   - ChEMBL:   CHEMBL266096
Molecular Formula:   C26H38N6O8S Mol. Weight:   594.2472 logP:   -1.3065
HBD:   7 HBA:   9
#Rotatable Bonds:   15 TPSA:   223.25
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Disulfide Formation CYS 223 A 4.9 99.99 Thiol
Binding Affinity
-