PDB Entry (4m1j) |
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PDB ID: 4m1j | Resolution: 1.8 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 23883096 | DOI: 10.1021/cb400345h | |
Protein |
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Protein Name: Acyl-homoserine lactone acylase PvdQ | |
Uniprot ID/ACC: Q9I194 (PVDQ_PSEAE) | Organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) |
Gene Symbol: pvdQ | Gene ID: 882260 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: tridecylboronic acid | ||
Canonical SMILES: OB(O)CCCCCCCCCCCCC | ||
Standard InChI: InChI=1S/C13H29BO2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14(15)16/h15-16H,2-13H2,1H3 | ||
HET Code: B0S | PubChem: 368422 | |
DrugBank: - | ChEMBL: CHEMBL1966359 | |
Molecular Formula: C13H29BO2 | Mol. Weight: 228.22606 | logP: 3.7702 |
HBD: 2 | HBA: 2 | |
#Rotatable Bonds: 12 | TPSA: 40.46 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Borylation | SER 217 | C | 12.19 | - | Boronic Acid |
Binding Affinity |
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Database Name | Value |
PDBBind | Ki : 0.2 nM |