PDB Entry (4m1j)
PDB ID: 4m1j Resolution: 1.8 Å Exp. Method: X-RAY DIFFRACTION
PMID: 23883096 DOI: 10.1021/cb400345h
Protein
Protein Name: Acyl-homoserine lactone acylase PvdQ
Uniprot ID/ACC: Q9I194 (PVDQ_PSEAE) Organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Gene Symbol: pvdQ Gene ID: 882260
Protein Class: HYDROLASE
Ligand
Ligand Name:   tridecylboronic acid
Canonical SMILES:   OB(O)CCCCCCCCCCCCC
Standard InChI:   InChI=1S/C13H29BO2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14(15)16/h15-16H,2-13H2,1H3
HET Code:   B0S PubChem:   368422
DrugBank:   - ChEMBL:   CHEMBL1966359
Molecular Formula:   C13H29BO2 Mol. Weight:   228.22606 logP:   3.7702
HBD:   2 HBA:   2
#Rotatable Bonds:   12 TPSA:   40.46
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Borylation SER 217 C 12.19 - Boronic Acid
Binding Affinity
Database Name Value
PDBBind Ki : 0.2 nM