PDB Entry (3gcd) |
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PDB ID: 3gcd | Resolution: 2.35 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 19465933 | DOI: 10.1038/nchembio.178 | |
Protein |
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Protein Name: Multifunctional-autoprocessing repeats-in-toxin | |
Uniprot ID/ACC: Q9KS12 (MARTX_VIBCH) | Organism: Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) |
Gene Symbol: rtxA | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: JCP598 | ||
Canonical SMILES: CCOC(=O)[C@H]1O[C@@H]1C(=O)N(CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)OCc2ccccc2 | ||
Standard InChI: InChI=1S/C30H46N4O8/c1-8-40-29(38)25-24(42-25)28(37)34(16-20(6)7)33-27(36)23(15-19(4)5)31-26(35)22(14-18(2)3)32-30(39)41-17-21-12-10-9-11-13-21/h9-13,18-20,22-25H,8,14-17H2,1-7H3,(H,31,35)(H,32,39)(H,33,36)/t22-,23-,24-,25-/m0/s1 | ||
HET Code: AZ0 | PubChem: 10919006 | |
DrugBank: - | ChEMBL: CHEMBL1213570 | |
Molecular Formula: C30H46N4O8 | Mol. Weight: 590.33154 | logP: 2.7047 |
HBD: 3 | HBA: 8 | |
#Rotatable Bonds: 15 | TPSA: 155.67 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Epoxide Opening | CYS 140 | A | 37.38 | 13.4 | Epoxide |
Binding Affinity |
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