PDB Entry (2woq)
PDB ID: 2woq Resolution: 1.75 Å Exp. Method: X-RAY DIFFRACTION
PMID: 19822707 DOI: 10.1128/AAC.00553-09
Protein
Protein Name: Delta-aminolevulinic acid dehydratase
Uniprot ID/ACC: Q59643 (HEM2_PSEAE) Organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Gene Symbol: hemB Gene ID: 879701
Protein Class: LYASE
Ligand
Ligand Name:   ALAREMYCIN 2
Canonical SMILES:   CC(=O)N[C@H](C)C(=O)CCC([O-])=O
Standard InChI:   InChI=1S/C8H13NO4/c1-5(9-6(2)10)7(11)3-4-8(12)13/h5H,3-4H2,1-2H3,(H,9,10)(H,12,13)/p-1/t5-/m1/s1
HET Code:   AYC PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C8H12NO4- Mol. Weight:   186.07718 logP:   -1.3898
HBD:   1 HBA:   4
#Rotatable Bonds:   5 TPSA:   86.3
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 260 A 17.32 3.48 Ketone
Binding Affinity
Database Name Value
PDBBind Ki : 1330000 nM