PDB Entry (2woq) |
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PDB ID: 2woq | Resolution: 1.75 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 19822707 | DOI: 10.1128/AAC.00553-09 | |
Protein |
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Protein Name: Delta-aminolevulinic acid dehydratase | |
Uniprot ID/ACC: Q59643 (HEM2_PSEAE) | Organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) |
Gene Symbol: hemB | Gene ID: 879701 |
Protein Class: LYASE |
Ligand |
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Ligand Name: ALAREMYCIN 2 | ||
Canonical SMILES: CC(=O)N[C@H](C)C(=O)CCC([O-])=O | ||
Standard InChI: InChI=1S/C8H13NO4/c1-5(9-6(2)10)7(11)3-4-8(12)13/h5H,3-4H2,1-2H3,(H,9,10)(H,12,13)/p-1/t5-/m1/s1 | ||
HET Code: AYC | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C8H12NO4- | Mol. Weight: 186.07718 | logP: -1.3898 |
HBD: 1 | HBA: 4 | |
#Rotatable Bonds: 5 | TPSA: 86.3 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Imine Condensation | LYS 260 | A | 17.32 | 3.48 | Ketone |
Binding Affinity |
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Database Name | Value |
PDBBind | Ki : 1330000 nM |