PDB Entry (5tnj)
PDB ID: 5tnj Resolution: 1.65 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28392259 DOI: 10.1016/j.str.2017.03.002
Protein
Protein Name: Putative hydrolase
Uniprot ID/ACC: A0A0H2ZD27 (A0A0H2ZD27_PSEAB) Organism: Pseudomonas aeruginosa (strain UCBPP-PA14)
Gene Symbol: PA14_26090 Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   4-Vinyl-1-cyclohexene 1,2-epoxide
Canonical SMILES:   C=C[C@@H](C1)CC[C@H](O2)[C@H]12
Standard InChI:   InChI=1S/C8H12O/c1-2-6-3-4-7-8(5-6)9-7/h2,6-8H,1,3-5H2/t6-,7+,8+/m1/s1
HET Code:   AVH PubChem:   124584073
DrugBank:   - ChEMBL:   -
Molecular Formula:   C8H12O Mol. Weight:   124.08881 logP:   1.7399
HBD:   0 HBA:   1
#Rotatable Bonds:   1 TPSA:   12.53
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Epoxide Opening ASP 129 A 18.85 9.47 Epoxide
Binding Affinity
-